Researchers have intensively used VLifeMDS for diverse applications to pursue their discovery endeavors. Many of these works have been published in journals, magazines and other print & electronic media.
Some of the unique methods available in VLifeMDS have also been published in reputed international scientific journals. The VLife team has also presented its work and methodologies in international conferences and seminars.
Please use the citations below to cite VLifeMDS.
VLifeMDS: Molecular Design Suite, VLife Sciences Technologies
Pvt. Ltd., Pune, India, 2010 (www.vlifesciences.com).
Research publications
VLifeMDS citations in patents
- Compositions for enhancing memory and methods therefor
Publication Date: 30.03.2006 (WO/2006/034196)
Publication Date:03/23/2006 United States Patent 20060063707
- Isoflavonoid analogs and their metal complexes as anti-cancer agents
Publication Date:05/31/2007
United States Patent 20070122843
- Molecule fragmentation scheme and method for designing new molecules
Publication Date:24/07/2008 (WO2008/087658)
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Mannem Rajeswara Reddy, Indrapal Singh Aidhen, Utkarsh A. Reddy, Geereddy Bhanuprakash Reddy, Kundane Ingle, and Sami Mukhopadhyay
"Synthesis of 4-C-β-D-Glucosylated Isoliquiritigenin and Analogues for Aldose Reductase Inhibition Studies"
European Journal of Organic Chemistry (2019)
DOI: 10.1002/ejoc.201900413
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Shivratna V. KHARE, Sujata P. CHOUDHARI, Siddharth P. PHALLE, Santosh S. KUMBHAR, Prafulla B. CHOUDHARI, Sambhaji R. MASAL, Aakash K. PATIL, Rakesh P. DHAVALE, Durgacharan A. BHAGWAT, Atul M. KADAM
"Optimization of Thiazolidone Scaffolds Using Pocket Modeling for Development of Potential Secretory System Inhibitors of Mycobacterium tuberculosis."
Turk J Pharm Sci 2019;16(2):196-205 (2019)
DOI: 10.4274/tjps.galenos.2018.12599
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Swapnil Dashrath Jadhav, Prafulla Balkrishna Choudhari and Manish Sudesh Bhatia
"In silico design, synthesis, characterization and pharmacological evaluation of captopril conjugates in the treatment of renal fibrosis"
New J. Chem., 2019, 43, 504-513, (2019)
DOI: 10.1039/C8NJ03836H
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Mishra Shashank Shekhar,T. Venkatachalam,Chandra Shekhar Sharma,Hemendra Pratap Singh,Sourav Kalra &Neeraj Kumar
"Computational investigation of binding mechanism of substituted pyrazinones targeting corticotropin releasing factor-1 receptor deliberated for anti-depressant drug design"
Journal of Biomolecular Structure and Dynamics, Volume 37, 2019 - Issue 12 Download citation(2019)
https://doi.org/10.1080/07391102.2018.1513379
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Veerasamy Ravichandran and Rajak Harish
"QSAR studies on imidazoles and sulfonamides as antidiabetic agents"
Ovidius University Annals of Chemistry, Volume 30: Issue 1, (2019)
DOI: https://doi.org/10.2478/auoc-2019-0002
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Snehal S. Ashtekar, Neela M. Bhatia, Manish S. Bhatia
"Exploration of Leads from Natural Domain Targeting HER2 in Breast Cancer: An In-Silico Approach"
International Journal of Peptide Research and Therapeutics, June 2019, Volume 25, Issue 2, pp 659–667(2019)
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V. Ravichandran,K. Rohini, R. Harish, S. Parasuraman, K. Sureshkuma
"Insights into the key structural features of triazolothienopyrimidines as anti-HIV agents using QSAR, molecular docking, and pharmacophore modeling"
Structural Chemistry, August 2019, Volume 30, Issue 4, pp 1471–1484(2019)
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Ramesh L. Sawant, Jyoti B. Wadekar, Santosh B. Kharat, and Hitakshi S. Makasare
"Targeting PPAR-? to design and synthesize antidiabetic thiazolidines, "
EXCLI J. 2018; 17: 598–607.(2018)
doi: 10.17179/excli2018-1325
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Asati V, Ghode P, Bajaj S, Jain SK, Bharti SK
"3D-QSAR and molecular docking studies on oxadiazole substituted benzimidazole derivatives: Validation of experimental inhibitory potencies towards COX-2."
Current Computer-aided Drug Design [03 Oct 2018](2018)
DOI: 10.2174/1573409914666181003153249
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Ramesh L. Sawant, Rahul Kale, Jyoti Wadekar, Amol Ghodechor, Abhijit Sherkar
"Targeting VEGF to design pyrimidines against breast cancer and diabetic retinopathy"
Moroccan Journal of Chemistry (2018) 689-699(2018)
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Dhanraj Patidar, Ashish Jain and Pradeep Kumar Mohanty
"2D QSAR MODEL BASED ON PYRIDINECARBOXAMIDE AND BENZAMIDE DERIVATIVES AS GLUCOKINASE ACTIVATOR"
World Journal of Pharmaceutical Research 2018 Volume 7, Issue 16, 777-788(2018)
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Geethaavacini, Gopiraja; Poh, Go P.; Yan, Lim Yi; Deepashini, Rajindran; Shalini, Sivadasan; Harish, Rajak; Sureshkumar, Krishnan; Ravichandran, Veerasamy
"QSAR and Pharmacophore Mapping Studies on Benzothiazinimines to Relate their Structural Features with anti-HIV Activity"
Medicinal Chemistry, Volume 14, Number 7, November 2018, pp. 733-740(8)(2018)
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Akanksha ., Vikas Mehta, Richa Dhingra, Neelima Dhingra
"QSAR Analysis on a Series of Triazole Based Tubulin Polymerization Inhibitors"
Research & Reviews: A Journal of Bioinformatics. 2017; 4(2): 5–20p.(2017)
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Neelima Dhingra, Priyanka Rana, Richa Dhingra, Monika.
"2D-QSAR Studies on Unsaturated 4-Azasteroids as 5a-reductase Inhibitors"
Research & Reviews: A Journal of Drug Design & Discovery. 2017; 4(1): 26–37p.(2017)
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Yogita K. Abhale, Abhijit D. Shinde, Keshav K. Deshmukh, Laxman Nawale, Dhiman Sarkar, Prafulla B. Choudhari, Santosh S. Kumbhar, Pravin C. Mhaske
"Synthesis, antimycobacterial screening and molecular docking studies of 4-aryl-4'-methyl-2'-aryl-2,5'-bisthiazole derivatives"
Medicinal Chemistry Research,(2017)
DOI: https://doi.org/10.1007/s00044-017-1988-5
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M. C. Sharma, S. Sharma,
"Exploration of new scaffolds pyrazole derivatives containing thiourea skeleton as anticancer activity using QSAR approach"
Network Modeling Analysis in Health Informatics and Bioinformatics,(2017)
https://doi.org/10.1007/s13721-017-0151-z
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PP Subramani, SV Khare, SP Choudhari, SP Phalle, SS Kumbhar, VS Kavade, AA Pratavale, PB Choudhari,
"Investigation on quantitative structure-activity relationships of benzoylamino benzoic acid derivatives as ß-ketoacyl-acyl carrier protein synthase III (FABH) inhibitors"
Marmara Pharmaceutical Journal, 21(3),631-643,(2017)
DOI: 10.12991/marupj.323292
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Santosh Sahadeo Kumbhar, Prafulla Balkrishna Choudhari, Manish Sudesh Bhatia,
"Investigation of fragment based quantitative regression on a series of substituted chromen-2-one derivatives as FXa inhibitors"
Marmara Pharmaceutical Journal,(21)3,: 620-630, (2017)(2017)
DOI: 10.12991/marupj.323292
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Kumbhar Santosh Sahadeo, Choudhari Prafulla Balkrishna, Pawar Vasanti Suresh, Bhatia Neela Manish, Bhatia Manish Sudesh
" Factor VIIa and Factor IXa Inhibitors as Anticoagulants: A Review "
Indian Journal of Pharmaceutical Education and Research,(2016)
DOI:10.5530/ijper.51.1.1
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Ghode Piyush, Tripathi Ravi, K. Jain Sanmati,
" 2-(2-Arylidenehydrazinyl) Thiazol-4(5H)-ones as Epidermal Growth Factor Receptor Inhibitors: A Combined Quantitative Structure Activity Relationship and Pharmacophore Study "
Current Enzyme Inhibition,12(2),137-144,(2016)
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Mukesh C. Sharma
" Identification of 3-Nitro-2,4,6-trihydroxybenzamide Derivatives as Photosynthetic Electron Transport Inhibitors by QSAR and Pharmacophore Studies "
Interdisciplinary Sciences: Computational Life Sciences,(2016)
DOI:10.1007/s12539-015-0019-9
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Sandeep Sankpal, Prafulla Choudhari, Santosh Kumbhar, Siddharth Phalle, Madhukar Deshmukh
" One pot synthesis and docking study of some tetrahydrobenzo[b]pyran derivatives as extended spectrum class lactamase inhibitors for urinary tract infection "
Thai Journal of Pharmaceutical Sciences, 40(3), 190-193,(2016)
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Sunil Menghani, Deweshri Kerzare, Nilesh Rarokar, Pramod Khedekar
" Molecular Docking, Synthesis and Evaluation of Antianxiety and Anticonvulsant potential of some Novel 3-(substituted benzylidene)5-phenyl-7-nitro-1, 3-dihydro-1H, 3H-1,4-Benzodiazepine-2-one "
American Journal of PharmTech Research,(2016)
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Zahid Zaheer, Firoz A. Kalam Khan, Jaiprakash N. Sangshetti, Rajendra H. Patil
"Expeditious synthesis, antileishmanial and antioxidant activities of novel 3-substituted-4-hydroxycoumarin derivatives"
Chinese Chemical Letters,(2015)
DOI:10.1016/j.cclet.2015.10.028
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Mubarak H. Shaikh, Dnyaneshwar D. Subhedar,Firoz A. Kalam Khan,Jaiprakash N. Sangshetti,Bapurao B. Shingate
"1,2,3-Triazole incorporated coumarin derivatives as a potential antifungal and antioxidant agents"
Chinese Chemical Letters,(2015)
DOI:10.1016/j.cclet.2015.11.003
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R. Balasaheb Aher, K. Roy
"First report on exploring classification and regression based QSAR modelling of Plasmodium falciparum glycogen synthase kinase (PfGSK-3) inhibitors"
SAR and QSAR in Environmental Research,(2015)
DOI: 10.1080/1062936X.2015.1104518
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Siddharth Sinha, Chetna Tyagi, Sukriti Goyal, Salma Jamal, Pallavi Somvanshi & Abhinav Grover
"Fragment based G-QSAR and molecular dynamics based mechanistic simulations into hydroxamic-based HDAC inhibitors against spinocerebellar ataxia"
Journal of Biomolecular Structure and Dynamics,(2015)
DOI:10.1080/07391102.2015.1113386
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Ravi Ranjan Kumar Niraj, Vandana Saini, Ajit Kumar
"QSAR analyses of organophosphates for insecticidal activity and its in-silico validation using molecular docking study"
Environmental Toxicology and Pharmacology, 40(3),886894,(2015)
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Mukesh C. Sharma, Smita Sharma, K. S. Bhadoriya,
"Molecular modeling studies on substituted aminopyrimidines derivatives as potential antimalarial compounds"
Medicinal Chemistry Research, (2014)
DOI: 10.1007/s00044-014-1199-2
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Amit M Pant, Rupesh V Chikhale, Sunil S Menghani and Pramod B Khedekar,
"LEDGF/p75 IN interaction inhibitors: in silico studies of an old target with novel approach",
BMC Infectious Diseases , 14(Suppl 3):P18, (2014)
DOI: 10.1186/1471-2334-14-S3-P18
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UTTAM K. TRIPATHI, SANGHMITRA SINGH, JAINENDRA JAIN AND JAYA DWIVEDI,
"3D QSAR STUDY OF PYRIMIDINES AS HIV ENTRY INHIBITORS",
Chemistry and Pharmaceutical Sciences,1(6), 64-70, (2014)
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Rajesh singh, Abhishek Jain, V. Ravichandran and R. K. Agrawal,
"In Silico Design of Novel Quinolinone Derivatives as Anticancer Agents",
International Journal of Drug Discovery & Herbal Research, 4(1), 709-716, (2014)
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Moustafa T. Gabr, Nadia S. El-Gohary, Eman R. El-Bendary, Mohamed M. El-Kerdawy,
"Synthesis and in vitro antitumor activity of new series of benzothiazole and pyrimido[2,1-b]benzothiazole derivatives",
European Journal of Medicinal Chemistry, (2014)
DOI: 10.1016/j.ejmech.2014.07.097
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Mukesh C. Sharma,
"Structural insights into mode of actions of novel substituted 4- and 6-azaindole-3-carboxamides analogs as renin inhibitors: molecular modeling studies",
Medicinal Chemistry Research, (2014)
DOI: 10.1007/s00044-014-1163-1
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Sanmati Kumar Jain, Ravi Tripathi and Piyush Ghode,
"CONVENTIONAL QSAR STUDIES OF THIAZOLIDINONE DERIVATIVES AS POTENTIAL EPIDERMAL GROWTH FACTOR RECEPTOR INHIBITORS",
WORLD JOURNAL OF PHARMACY AND PHARMACEUTICAL SCIENCES,3(8), 1811-1821, (2014)
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Moustafa T. Gabr, Nadia S. El-Gohary, Eman R. El-Bendary, Mohamed M. El-Kerdawy,
"New series of benzothiazole and pyrimido[2,1-b]benzothiazole derivatives: synthesis, antitumor activity, EGFR tyrosine kinase inhibitory activity and molecular modeling studies",
Medicinal Chemistry Research, (2014)
DOI: 10.1007/s00044-014-1114-x
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P. Sudheer Kumar, Fitzerald Hujon and Ananda Kumar,
"A Review on Computer-Aided Drug Design",
International Journal of Chemistry and Pharmaceutical Sciences, 2(7),1007-1014, (2014)
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V. K. Srivastav, M. Tiwari,
"k-nearest neighbor molecular field analysis based 3D-QSAR and in silico ADME/T studies of cinnamoyl derivatives",
Medicinal Chemistry Research, (2014)
DOI: 10.1007/s00044-014-1183-x
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Mukesh C. Sharmaa, Smita Sharma,
"Prediction of Potent Therapeutic Targets of anticonvulsant ligands Substituted 4, 6-Dichloroindole-2-carboxylic acids as N-methyl-D-aspartate receptor: Molecular Modelling approach",
Journal of Taibah University for Science, (2013)
http://dx.doi.org/10.1016/j.jtusci.2013.12.001
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Sujit Arun Desai, Santosh Sahedeo Kumbhar, Vishal Shankar Katti, Prafulla Balkrishna Choudhari, Manish Sudesh Bhatia,
"3D QSAR and Pharmacophore Modelling on Chalcones as Antileishmanial Agents potential Trypanothione reductase Inhibitors",
Journal of Applied Pharmaceutical Science,3(12),099-102, (2013)
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Chetna Tyagi, Sonam Grover, Jaspreet Kaur Dhanjal, Sukriti Goyal, Manisha Goyal, Abhinav Grover,
"Mechanistic insights into mode of actionof novel natural cathepsin L inhibitors",
BMC Genomics,14(Suppl 8):S10, (2013)
DOI:10.1186/1471-2164-14-S8-S10
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Doreswamy and Chanabasayya .M. Vastrad,
"PREDICTIVE COMPARATIVE QSAR ANALYSIS OF AS 5-NITROFURAN-2-YL DERIVATIVES MYCO BACTERIUM TUBERCULOSIS H37RV INHIBITORS",
Health Informatics- An International Journal (HIIJ), 2(4), 47-62, (2013)
DOI:10.5121/hiij.2013.2404
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Sivakumar Prasanth Kumar, Yogesh T. Jasrai, Himanshu A. Pandya & Rakesh M. Rawal,
"Pharmacophore-similarity-based QSAR (PS-QSAR) for group-specific biological activity predictions",
Journal of Biomolecular Structure and Dynamics (2013)
DOI:10.1080/07391102.2013.849618
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Meenakshi Deodhar, PRIYANKA KHOPADE, and MAHESH VARAT,
"Sulfonamide based β- Carbonic Anhydrase Inhibitors-2D QSAR study"
ISRN Medicinal Chemistry,volume2013, 6, (2013)
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Dinesh Rishipathak, Prabhakar Shirodkar,
"Design and Molecular Docking Studies of Some 1,3,4-Oxadiazole Derivatives",
International Journal of Pharmaceutical Sciences Review and Research,23(1),285-289, (2013)
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Kalyani D. Asgaonkar, Ganesh D.Mote, T.S.Chitre,
"QSAR and Molecular docking studies of oxadiazole ligated Pyrrole derivatives as Enoyl ACP co Reductase Inhibitors",
Scientia Pharmaceutica, (2013)
DOI:10.3797/scipharm.1310-05
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Manoj P. Ramteke,Pradnya Shelke, Vidhya Ramamoorthy, Arun Kumar, Amit Kumar Singh Gautam, Padma P. Nanaware, Sudheer Karanam, Sami Mukhopadhyay,Prasanna Venkatraman,
"Identification of a novel ATPase activity in 14-3-3 proteins – Evidence from enzyme kinetics, structure guided modeling and mutagenesis studies",
FEBS Letters, (2013)
DOI:10.1016/j.febslet.2013.11.008
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Magda A.-A. El-Sayed, Naglaa I. Abdel-Aziz, Alaa A.-M. Abdel-Aziz, Adel S. El-Azab,Kamal E.H. ElTahir,
"Synthesis, biological evaluation and molecular modeling study of pyrazole and pyrazoline derivatives as selective COX-2 inhibitors and anti-nflammatory agents. Part 2",
Bioorganic & Medicinal Chemistry,20,3306–3316, (2012)
http://dx.doi.org/10.1016/j.bmc.2012.03.044
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Vivek K. Vyas, Manjunath Ghate,
"2D and 3D QSAR study on amino nicotinic acid and isonicotinic acid derivatives as potential inhibitors of dihydroorotate dehydrogenase (DHODH)",
Medicinal Chemistry Research,21(10),3021-3034, (2012)
DOI:10.1007/s00044-011-9837-4
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Radhika H. Datani, Suvarna G. Kini, Muhammad Mubeen,
"Design, Synthesis and Vasorelaxant activity of 5-Nitro Benzimidazole Derivatives",
Journal of Computational Methods in Molecular Design,2(4),149-157, (2012)
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Ravindra Kumar Chourasiya,A. Raghuram Rao,Ram Kishore Agrawal,
"QSAR and docking studies of novel β-carboline derivatives as nticancer",
Medicinal Chemistry Research", (2012)
DOI:10.1007/s00044-012-0296-3
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Rishikesh V. Antre, Rajesh J. Oswal, Sandip S. Kshirsagar, Pranita P. Kore and Madhavi M. Mutha,
"2D-QSAR Studies of Substituted Pyrazolone Derivatives as Anti-Inflammatory Agents",
Medicinal chemistry,2(6),126-130, (2012)
http://dx.doi.org/10.4172/2161-0444.1000127
- Supratik Kar and Kunal Roy,
"QSAR of phytochemicals for the design of better drugs",
Expert Opinion on Drug Discovery,7(10),877-902, (2012)
DOI:10.1517/17460441.2012.716420
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Sanmati K. Jain and Sudip Nag,
"3D QSAR Analysis on Arylbenzofuran derivatives as Histamine H3 Receptor Inhibitors using k Nearest Neighbor Molecular Field Analysis (KNNMFA)",
International Journal of PharmTech Research,4(4),1691-1702, (2012)
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Kore P V, Antre R V, Baheti K G, More P M, Mutha M M,
"2D QSAR STUDIES OF SUBSTITUTED PYRAZOLE DERIVATIVES AS ANTIINFLAMMATORY AGENT",
Inventi Rapid: Med Chem , Vol. 2013 , Article ID- " Inventi:pmc/234/12, (2012)
http://www.inventi.in/Article/pmc/234/12.aspx
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Poonam M More, Rishikesh V Antre, Tushar T Shelke, Madhavi M Mutha, Sahar M Badr, Hassan M Eisa and Pradeep V Kore,
"Docking Studies of Benzimidazole Derivatives as Coenzyme-A Carboxylase (ACCase) Inhibitor",
Open Access Scientific Reports, (2012)
DOI:10.4172/scientificreports.439
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Jagdeesh Ahirwar, A. B. Mundada and A. K. Pathak,
"QSAR STUDIES & DESIGNING OF POTENT HETEROCYCLIC COMPOUNDS AS γ-SECRETASE INHIBITORS",
International Journal of Pharmaceutical Sciences and Research,3(11), 4349-4362, (2012)
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Anupama Parate and S. C. Chaturvedi,
"Predicting 3H-1,2,4-triazolinones as angiotensin II receptor antagonists: 2D and 3D QSAR by kNN-molecular field analysis approach",
Medicinal Chemistry Research, (2011)
DOI:10.1007/s00044-011-9622-4
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Kuldeep Singh Patel, Piyush Trivedi,
"QSAR Analysis of Meta-substituted Phenyl propanoic acids as Peroxisome Proliferator-
Activated Receptor Gamma Agonists as Antidiabetic agents",
International Journal of PharmTech Research,3(4),1992-1995, (2011)
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Alaa A.-M. Abdel-Aziz,Yousif A. Asiri, Mohamed H.M. Al-Agamy,
"Design, synthesis and antibacterial activity of fluoroquinolones containing bulky arenesulfonyl fragment: 2D-QSAR and docking study",
European Journal of Medicinal Chemistry,46(11),5487-5497, (2011)
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Nitendra K. Sahu, Sanjaykumar B. Bari and D. V. Kohli,
"Molecular modeling studies of some substituted chalcone derivatives as cysteine protease inhibitors",
Medicinal Chemistry Research, (2011)
DOI:10.1007/s00044-011-9900-1
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Ashutosh Pandey, Omprakash Tanwar, Girdhar Deora, Chandrabose Karthikeyan, N. Hari Narayana Moorthy, Piyush Trivedi,
"Modeling VEGFR kinase inhibition of aminopyrazolopyridine urea derivatives using topological and physicochemical descriptors: a quantitative structure activity analysis study",
Medicinal Chemistry Research, (2011)
DOI:10.1007/s00044-011-9926-4
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Patil Swaraj, Prajapati Amit, Ansari Khusbu, Khodre Suraj,Choudhary Shrikant,
"3D QSAR Analysis on Triazepane Derivatives as DPP-IV Inhibitors",
International Journal of Research in Pharmacy and Science,1(3), 170-179, (2011)
-
NAVIN RAJ, SANMATI K. JAIN,
"3D QSAR studies in conjunction with k-Nearest neighbor molecular field analysis (k-NN-MFA) on a series of substituted 2-phenyl-benzimidazole derivatives as an anti allergic agents",
Digest Journal of Nanomaterials and Biostructures,6(4),1811-1821, (2011)
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Ruchi Bhatiya, Ankur Vaidya, Sushil K. Kashaw, Abhishek K. Jain, Ram K Agrawal,
"QSAR analysis of furanone derivatives as potential COX-2 inhibitors: kNN MFA approach",
Journal of Saudi Chemical Society, (2011)
http://dx.doi.org/10.1016/j.bbr.2011.03.031
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Bachwani Mukesh, Kumar Rakesh,
"Molecular Docking: A Review",
International Journal of Research in Ayurveda and Pharmacy,2(6),1746-1751, (2011)
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Ayarivan Puratchikody, Ramalakshmi Natarajan, Mohanapriya Jayapal, Mukesh Doble,
"Synthesis, In Vitro Antitubercular Activity and 3D-QSAR of Novel Quinoxaline Derivatives",
Chemical Biology & Drug Design,78,988–998, (2011)
DOI:10.1111/j.1747-0285.2011.01246.x
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Derseree Archary,Michelle L. Gordon,Taryn N. Green,Hoosen M. Coovadia,Philip J.R. Goulder,Thumbi Ndung'u,
"HIV-1 subtype C envelope characteristics associated with divergent rates of
chronic disease progression",
Retrovirology, (2010)
DOI:10.1186/1742-4690-7-92.
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Aarti Garg, Rupinder Tewari, Gajendra PS Raghava,
"Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis",
BMC Bioinformatics,11(Suppl 1), (2010)
DOI:10.1186/1471-2105-11-S1-S53
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Andreia Palmeira, Freddy Rodrigues, Emília Sousa,Madalena Pinto,M. Helena Vasconcelos,Miguel X. Fernandes,
"Pharmacophore-Based Screening as a Clue for the Discovery of New P-Glycoprotein Inhibitors",
Advances in Bioinformatics,Springer Berlin / Heidelberg,175-180, (2010)
DOI: 10.1007/978-3-642-13214-8_23
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Vidya Pawar, Deepak Lokwani, Shashikant Bhandari,Debashis Mitra, Sudeep Sabde, Kailash Bothara , Ashwini Madgulkar
"Design of potential reverse transcriptase inhibitor containing Isatin nucleus using molecular modeling studies",
Bioorganic & Medicinal Chemistry, 18(9), 3198-3211, (2010)
DOI:10.1016/j.bmc.2010.03.030
- Rajeev K Singla, Varadaraj Bhat,
"QSAR model for predicting the fungicidal action of 1,2,4-triazole derivatives against Candida albicans",
Journal of Enzyme Inhibition and Medicinal Chemistry, (2010)
DOI: 10.3109/14756360903524296
-
Deepak Lokwani, Shashikant Bhandari, Radha Pujari, Padma Shastri, Ganesh shelke, Vidya Pawar,
"Use of Quantitative Structure–Activity Relationship (QSAR) and ADMET prediction studies as screening methods for design of benzyl urea derivatives for anti-cancer activity",
Journal of Enzyme Inhibition and Medicinal Chemistry, (2010)
DOI: 10.3109/14756366.2010.506437
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Sivakumar P.M., Kumar V., Seenivasan S.P., Mohanapriya J.,Doble M,
"Anti tubercular activity of chalcones - Experimental and QSAR studies",
Advances in Biomedical Research.,WSEAS Press, University of Cambridge, UK, p. 168-172, (2010)
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Keshari Kishore Jha, Abdul Samad, Yatendra Kumar, Mohd. Shaharyar, Ratan Lal Khosa, Jainendra Jain, Vikash kumar and Priyanka Singh,
"Design, Synthesis and Biological Evaluation of 1, 3, 4-oxadiazole Derivatives",
European Journal of Medicinal Chemistry, (2010)
DOI:10.1016/j.ejmech.2010.08.003
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Hemal A. Bhuva,Suvarna G. Kini,
"Synthesis, anticancer activity and docking of some substituted benzothiazoles as tyrosine kinase inhibitors",
Journal of Molecular Graphics and Modelling, (2010)
DOI: 10.1016/j.jmgm.2010.04.003
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Santosh S. Chhajed, Puranik Manisha, Virupaksha A. Bastikar, Haldar Animeshchandra, V.N. Ingle, Chandrashekhar D. Upasani and Sachin S. Wazalwar,
"Synthesis and molecular modeling studies of 3-chloro-4-substituted-1-(8-hydroxy-quinolin-5-yl)-azetidin-2-ones as novel anti-filarial agents",
Bioorganic & Medicinal Chemistry Letters,20(12),3640-3644, (2010)
- Maria Teresa Giardi, Viviana Scognamiglio, Giuseppina Rea, Giuseppe Rodio, Amina Antonacci, Maya Lambreva, Gianni Pezzotti and Udo Johanningmeier,
"Optical biosensors for environmental monitoring based on computational and biotechnological tools for engineering the photosynthetic D1 protein of Chlamydomonas reinhardtii",
Biosensors and Bioelectronics, Vol 25 Issue 2, 294-300 (2009)
DOI: 10.1016/j.bios.2009.07.003
- Giuseppina Rea, Fabio Polticelli, Amina Antonacci, Viviana Scognamiglio, Prashant Katiyar, Sudhir A. Kulkarni, Udo Johanningmeier, Maria Teresa Giardi,
"Structure-based design of novel Chlamydomonas reinhardtii D1-D2 photosynthetic proteins for herbicide monitoring",
Protein Science,18,2139—2151 (2009)
DOI: 10.1002/pro.228
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K. Kanagarajadurai, M. Malini, A. Bhattacharya, M. Panicker, R. Sowdhamini,
"Molecular modeling and docking studies of human 5-hydroxytryptamine 2A (5-HT2A) receptor for the identification of hotspots for ligand binding",
Molecular BioSystyms, 5, 1877 - 1888, (2009)
DOI: 10.1039/b906391a
- Payel Ghosh, Manish C. Bagchi,
"QSAR Modeling for Quinoxaline Derivatives using Genetic Algorithm and Simulated Annealing based Feature Selection",
Current Medicinal Chemistry,Vol 16(30),4032-4048 (2009)
DOI: 10.2174/092986709789352303
- A. K. Pandey, D. Gurbani, M. Bajpayee, D. Parmar, S. Ajmani,A. Dhawan,
"In silico studies with human DNA Topoisomerase II alpha to unravel the mechanism of in vitro genotoxicity of benzene and its metabolites",
Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 661, 57–70 (2009)
- Viney Lather, Miguel X. Fernandes,
"QSAR Models for Prediction of PPAR Agonistic Activity of Indanylacetic Acid Derivatives",
QSAR & Combinatorial Science,Volume 28(4), 447 - 457 (2009)
- Subhash Ajmani, Kamalakar Jadhav, Sudhir A. Kulkarni
"Group Based QSAR (G-QSAR) : Mitigating Interpretation Challenges in QSAR"
QSAR & Combinatorial Science, 28(1),36–51 (2009)
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Ram Prakash Rajwade, Rama Pande, K. P. Mishra, Amit Kumar, B. N. Pandey,
"Hydroxamic Acids Analogous Against Breast Cancer Cells: 2D-QSAR and 3D-QSAR Studies",
QSAR & Combinatorial Science, (2009)
DOI: 10.1002/qsar.200910023
- Subhash Ajmani, Sudheer Karanam,Sudhir A. Kulkarni,
"Rationalizing Protein–Ligand Interactions for PTP1B Inhibitors Using Computational Methods",
Chemical Biology & Drug Design,74,582–595 (2009)
DOI: 10.1111/j.1747-0285.2009.00894.x
- Sisir Nandi, Manish C. Bagchi,
"3D-QSAR and molecular docking studies of 4-anilinoquinazoline derivatives: A rational approach to anticancer drug design",
Molecular Diversity (2009) DOI: 10.1007/s11030-009-9137-9
- Subhash Ajmani,Stephen C Rogers, Mark H Barley, Andrew N Burgess, David J. Livingstone,
"Characterisation of Mixtures Part 1: Prediction of infinite-dilution activity coefficients using neural network based QSPR models",
QSAR and Combinatorial Science, 27, No. 11-12, 1346–136, (2008)
- Subhash Ajmani and Sudhir A. Kulkarni
"A Dual-Response Partial Least Squares Regression QSAR Model and its Application in Design of Dual Activators of PPAR-alpha and PPAR-gamma"
QSAR & Combinatorial Science, 27, No. 11-12, 1291–1304, (2008)
- R. Singh, A. Jain, V. Mourya, V. Ravichandran, R. K. Agrawal,
"Prediction of antiproliferative activity of some flavone derivatives: QSAR study",
Med. Chem. Res. (2008) DOI: 10.1007/s00044-008-9146-8
- N. Chahar, L. K. Soni, S. G. Kaskhedikar
“QSAR modeling of 6-aryl-2-substituted pyrimidin-4-yl phenols as anti-malarial agents”
AAPS Journal, 001502 Vol 10(S2), (2008)
- J. V. Shah, S. V. Bhandari, V. Vaidyanathan
"Design of New Chemical Entities as Antibacterial Agents: Structure Optimization of Series of
Nitrile Containing Fluoroquinolones Using 3-D QSAR and CombiLib Approach.”,
AAPS Journal, 002125, 10(S2), (2008)
- Abhishek K. Jain, Nimita Manochac , V. Ravichandrana, V. K. Mourya, R. K.Agrawal,
"Three-Dimensional QSAR Study of 2,4 – Disubstituted- Phenoxy Acetic Acid Derivatives as a CRTh2 as a Receptor an Agonist: Using the k-Nearest Neighbor method",
Digest Journal of Nanomaterials and Biostructures 3,147-158 (2008)
- N. Kansal, O. Silakari, and M Ravikumar
"Three–Dimensional Molecular Field Analysis of Dihydroindazolocarbazole Analogues of KDR and Tie–2 Receptor Tyrosine Kinase"
Inhibitors, Internet Electron. J. Mol. Des. 7, 142–151, (2008)
- Virupaksha A. Bastikar, Shweta R. Fulsundar & Jagdish S. Nair
"In Silico Docking Analysis of Peptide Deformylase (PDF) A Novel Target for Prophylaxis of Leptospirosis"
Available from Nature Precedings http://hdl.handle.net/10101/npre.2008.1520.1 (2008) Link
- Sumit Bhaduri, Sami Mukhopadhyay, Sudhir A. Kulkarni
"Role of titanium oxidation states in polymerization activity of Ziegler Natta catalyst: A density functional study"
Journal of Organometallic Chemistry 691, 2810-2820 (2006) Link
- Vivek Barve, Fakhara Ahmed, Shreelekha Adsule, Sanjeev Banerjee, Sudhir Kulkarni, Prashant Katiyar, Christopher E. Anson, Annie K. Powell, Subhash Padhye, and Fazlul H. Sarkar
"Synthesis, Molecular Characterization, and Biological Activity of Novel Synthetic Derivatives of Chromen-4-one in Human Cancer Cells"
J. Med. Chem. 49, 3800-3808 (2006) Link
- Fakhara Ahmed, Shreelekha Adsule, Ashhar S. Ali, Sanjeev Banerjee, Shadan Ali, Sudhir Kulkarni, Subhash Padhye, Fazlul H Sarkar
"A novel copper complex of 3-benzoyl-alpha methyl benzene acetic acid with anti-tumor activity mediated via cyclooxygenase pathway"
International Journal of Cancer, 120, 734-742. (2006) Link
- Special Issue: Challenges in Virtual Screening,"Abstracts of QSAR-related Publications: 3D QSAR",
QSAR Combi. Sci., 12,1203-1203 (2006)
- Subhash Ajmani, Kamalakar Jadhav and Sudhir A. Kulkarni
"Three-Dimensional QSAR Using the k-Nearest Neighbor Method and Its Interpretation"
J. Chem. Inf. Model. 46, 24-31, (2006) Link
- Sarkar FH, Adsule S, Padhye S, Kulkarni S, Li Y.
"The Role of Genistein and Synthetic Derivatives of Isoflavone in Cancer Prevention and Therapy"
Mini-Reviews in Medicinal Chemistry. 2006 Vol 6, No. 5, (2006) Link
- Murthy, J. Narashima; Nagaraju, M.; Sastry, G. Madhavi; Rao, A. Raghuram; Sastry, G.Narahari
"Active site acidic residues and structural analysis of modelled human aromatase: A potential drug target for breast cancer"
Journal of Computer-Aided Molecular Design, Vol 19, No. 12, (2005) Link
- Sami Mukhopadhyay, Sudhir A. Kulkarni, Sumit Bhaduri
"Density functional study on the role of electron donors in propylene polymerization using Ziegler Natta catalyst"
Journal of Organometallic Chemistry 690. 1356-1365, (2005) Link
- Hima Bindu P., Madhavi Sastry G., Narahari Sastry G.
"Characterization of calcium and magnesium binding domain of human 5-lipoxygenase"
Biochemical and Biophysical Research Communications 320. 461-467 (2004) Link
- Reena Gollapudy, Subhash Ajmani and Sudhir A. Kulkarni
"Modeling and interactions of Aspergillus fumigatus lanosterol 14-ademethylase ‘A’ with azole antifungals"
Bioorganic Medicinal Chemistry 12. 2937-2950 (2004) Link
- Sami Mukhopadhyay, Sudhir A. Kulkarni, Sumit Bhaduri
"Density functional study on the role of electronic factors in variation of polymerization activity for Ziegler Natta catalyst"
Journal of Molecular Structure (Theochem) 673, 65-77 (2004) Link
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